Featured post

#Avian #Influenza #H7N9 in #China: Preventing the Next #SARS (@WHO, Apr. 2 ‘17)

  Title : #Avian #Influenza #H7N9 in #China: Preventing the Next #SARS. Subject : Avian Influenza, H7N9 subtype (Asian Lineage), poultry e...

1 Feb 2013

2012-2013 Influenza Season Week 4 ending January 26, 2013 (US CDC, February 1 2013, edited)

[Source: US Centers for Disease Control and Prevention (CDC), FluView, full page: (LINK). Edited.]

2012-2013 Influenza Season Week 4 ending January 26, 2013

All data are preliminary and may change as more reports are received.



During week 4 (January 20-26), influenza activity remained elevated in the United States, but decreased in some areas.

  • Viral Surveillance: Of 10,581 specimens tested and reported by collaborating laboratories, 2,701 (25.5%) were positive for influenza.
  • Pneumonia and Influenza Mortality: The proportion of deaths attributed to pneumonia and influenza (P&I) was above the epidemic threshold.
  • Influenza-Associated Pediatric Deaths: Eight pediatric deaths were reported.
  • Influenza-Associated Hospitalizations: A cumulative rate for the season of 25.9 laboratory-confirmed influenza-associated hospitalizations per 100,000 population was reported. Of all hospitalizations, more than 50% were among adults 65 years and older.
  • Outpatient Illness Surveillance: The proportion of outpatient visits for influenza-like illness (ILI) was 4.2%; this is above the national baseline of 2.2%. All 10 regions reported ILI above region-specific baseline levels. Twenty-four states and New York City experienced high ILI activity; the District of Columbia and 13 states experienced moderate activity; 4 states experienced low activity; and 9 states experienced minimal activity.
  • Geographic Spread of Influenza: Forty-two states reported widespread geographic influenza activity; 7 states reported regional activity; the District of Columbia and one state reported local activity; Guam reported sporadic influenza activity, and Puerto Rico and the U.S. Virgin Islands did not report.

A description of surveillance methods is available at:


National and Regional Summary of Select Surveillance Components

[HHS Surveillance Regions* - Data for current week: Out-patient ILI† - % positive for flu‡ - Number of jurisdictions reporting regional or widespread activity§ - Data cumulative since September 30, 2012 (Week 40): 2009 H1N1 - A (H3) - A(Subtyping not performed) – B - Pediatric Deaths]

  • Nation – Elevated - 25.5% - 49 of 54 – 551 - 24,490 - 11,748 - 9,061 – 45
  • Region 1 -  Elevated -  36.5% -  6 of 6 -  45 -  2,118 -  482 -  145 -  2
  • Region 2 -  Elevated -  28.6%  -  2 of 4 -   74 -  1,784 -  1,593 -  347 -  8
  • Region 3 -  Elevated -  35.4% -  5 of 6 -  125 -  5,376 -  443 -  593 -  0
  • Region 4 -  Elevated -  24.7% -  8 of 8 -  39 -  2,205 -  5,021 -  1,540 -  7
  • Region 5 -  Elevated -  42.5% -  6 of 6 -  49 -  4,085 -  404 -  680 -  8
  • Region 6 -  Elevated -  29.5% -  5 of 5 -  31 -  1,577 -  1,883 -  2,472 -  10
  • Region 7 -  Elevated -  27.9% -  4 of 4 -  15 -  1,687 -  167 -  667 -  2
  • Region 8 -  Elevated -  27.6% -  6 of 6 -  79  -  2,242 -  1,301 -  2,051 -  5
  • Region 9  -  Elevated -  25.2% -  3 of 5 -  72 -  1,523 -  290 -  312 -  2
  • Region 10 -  Elevated -  28.5% -  4 of 4 -  22 -  1,893 -  164 -  254 -  1

*HHS regions (Region 1 CT, ME, MA, NH, RI, VT; Region 2: NJ, NY, Puerto Rico, US Virgin Islands; Region 3: DE, DC, MD, PA, VA, WV; Region 4: AL, FL, GA, KY, MS, NC, SC, TN; Region 5: IL, IN, MI, MN, OH, WI; Region 6: AR, LA, NM, OK, TX; Region 7: IA, KS, MO, NE; Region 8: CO, MT, ND, SD, UT, WY; Region 9: AZ, CA, Guam, HI, NV; and Region 10: AK, ID, OR, WA).

† Elevated means the % of visits for ILI is at or above the national or region-specific baseline

‡ National data are for current week; regional data are for the most recent three weeks

§ Includes all 50 states, the District of Columbia, Guam, Puerto Rico, and U.S. Virgin Islands


U.S. Virologic Surveillance:

U.S. World Health Organization (WHO) and National Respiratory and Enteric Virus Surveillance System (NREVSS) collaborating laboratories located in all 50 states and Puerto Rico report to CDC the number of respiratory specimens tested for influenza and the number positive by influenza virus type and influenza A virus subtype. Region specific data can be found at


Week 4

  • No. of specimens tested - 10,581
    • No. of positive specimens (%) - 2,701 (25.5%)
      • Positive specimens by type/subtype:
        • Influenza A - 2,141 (79.3%)
          • 2009 H1N1 - 54 (2.5%)
          • Subtyping not performed - 1,034 (48.3%)
          • H3 - 1,053 (49.2%)
        • Influenza B - 560 (20.7%)


View National and Regional Level Graphs and Data

Since the start of the season, influenza A (H3N2) viruses have predominated nationally, followed by influenza B viruses, while 2009 H1N1 viruses have been identified less frequently. Over the course of the season the predominant circulating virus has varied by state and by region.


Antigenic Characterization:

CDC has antigenically characterized 920 influenza viruses [Sixty-six 2009 H1N1 viruses, 556 influenza A (H3N2) viruses, and 298 influenza B viruses] collected by U.S. laboratories since October 1, 2012.

2009 H1N1 [66]:

  • All sixty-six 2009 H1N1 viruses tested were characterized as A/California/7/2009-like, the influenza A (H1N1) component of the 2012-2013 influenza vaccine for the Northern Hemisphere.

Influenza A (H3N2) [556]:

  • 554 (99.6%) of the 556 H3N2 influenza viruses tested have been characterized as A/Victoria/361/2011-like, the influenza A (H3N2) component of the 2012-2013 Northern Hemisphere influenza vaccine.
  • 2 (0.4%) of the 556 H3N2 viruses tested showed reduced titers with antiserum produced against A/Victoria/361/2011.

Influenza B (B/Yamagata/16/88 and B/Victoria/02/87 lineages) [298]:

  • Yamagata Lineage [211]: 211 (70.8%) of the 298 influenza B viruses tested so far this season have been characterized as B/Wisconsin/1/2010-like, the influenza B component of the 2012-2013 Northern Hemisphere influenza vaccine.
  • Victoria Lineage [87]: 87 (29.2%) of 298 influenza B viruses tested have been from the B/Victoria lineage of viruses.


Antiviral Resistance:

Testing of 2009 H1N1, influenza A (H3N2), and influenza B virus isolates for resistance to neuraminidase inhibitors (oseltamivir and zanamivir) is performed at CDC using a functional assay. Additional 2009 influenza A (H1N1) clinical samples are tested for a single mutation in the neuraminidase of the virus known to confer oseltamivir resistance (H275Y). The data summarized below combine the results of both testing methods. These samples are routinely obtained for surveillance purposes rather than for diagnostic testing of patients suspected to be infected with antiviral-resistant virus.

High levels of resistance to the adamantanes (amantadine and rimantadine) persist among 2009 influenza A (H1N1) and A (H3N2) viruses (the adamantanes are not effective against influenza B viruses). As a result, data from adamantane resistance testing are not presented below.


Neuraminidase Inhibitor Resistance Testing Results on Samples Collected Since October 1, 2012

[Oseltamivir: Virus Samples tested (n) - Resistant Viruses, Number (%) – Zanamivir: Virus Samples tested (n) - Resistant Viruses, Number (%)]

  • Influenza A (H3N2) - 901* - 0 (0.0) - 901* - 0 (0.0)
  • Influenza B – 322 - 0 (0.0) – 322 - 0 (0.0)
  • 2009 H1N1 - 135* -  1 (0.7) -  70 -  0 (0.0)

*Includes specimens tested in national surveillance and additional specimens tested at public health laboratories in six states (AZ, ME, MD, MI, NY, and PA) who share testing results with CDC.

The majority of currently circulating influenza viruses are susceptible to the neuraminidase inhibitor antiviral medications oseltamivir and zanamivir; however, rare sporadic cases of oseltamivir-resistant 2009 H1N1 and A (H3N2) viruses have been detected worldwide. Antiviral treatment with oseltamivir or zanamivir as early as possible is recommended for patients with confirmed or suspected influenza who have severe, complicated, or progressive illness; who require hospitalization; or who are at greater risk for serious influenza-related complications. Additional information on recommendations for treatment and chemoprophylaxis of influenza virus infection with antiviral agents is available at


Novel Influenza A Virus:

No new human infections with novel influenza A viruses were reported to CDC during week 4.

A total of 312 infections with variant influenza viruses (308 H3N2v viruses, 3 H1N2v viruses, and 1 H1N1v virus) have been reported from 11 states since July 2012. More information about H3N2v infections can be found at


Pneumonia and Influenza (P&I) Mortality Surveillance:

During week 4, 9.4% of all deaths reported through the 122 Cities Mortality Reporting System were due to P&I. This percentage was above the epidemic threshold of 7.4% for week 4.


View Full Screen


Influenza-Associated Pediatric Mortality:

Eight influenza-associated pediatric deaths were reported to CDC during week 4. Five were associated with influenza A (H3) viruses and occurred during weeks 3 and 4 (weeks ending January 19 and 26, 2013), one was associated with an influenza A virus for which the subtype was not determined and occurred during week 4 (week ending January 26, 2013), and two were associated with influenza B viruses and occurred during week 1 (week ending January 5, 2013).

A total of 45 influenza-associated pediatric deaths have been reported during the 2012-2013 season from New York City [1] and 20 states (Arkansas [1], Arizona [1], Colorado [5], Florida [5], Hawaii [1], Indiana [1], Kansas [1], Maine [1], Massachusetts [1], Michigan [4], Minnesota [1], Nebraska [1], New Jersey [4], New York [3], Ohio [1], South Carolina [1], Tennessee [1], Texas [9], Washington [1], and Wisconsin [1]). Additional data can be found at


View Interactive Application


Influenza-Associated Hospitalizations:

The Influenza Hospitalization Surveillance Network (FluSurv-NET) conducts population-based surveillance for laboratory-confirmed influenza-related hospitalizations in children younger than 18 years of age (since the 2003-2004 influenza season) and adults (since the 2005-2006 influenza season).

The FluSurv-NET covers more than 80 counties in the 10 Emerging Infections Program (EIP) states (CA, CO, CT, GA, MD, MN, NM, NY, OR, TN) and additional Influenza Hospitalization Surveillance Project (IHSP) states. The IHSP began during the 2009-2010 season to enhance surveillance during the 2009 H1N1 pandemic. IHSP sites included IA, ID, MI, OK and SD during the 2009-2010 season; ID, MI, OH, OK, RI, and UT during the 2010-2011 season; MI, OH, RI, and UT during the 2011-2012 season; and IA, MI, OH, RI, and UT during the 2012-2013 season.

Data gathered are used to estimate age-specific hospitalization rates on a weekly basis, and describe characteristics of persons hospitalized with severe influenza illness. The rates provided are likely to be an underestimate as influenza-related hospitalizations can be missed, either because testing is not performed, or because cases may be attributed to other causes of pneumonia or other common influenza-related complications.

Between October 1, 2012 and January 26, 2013, 7,224 laboratory-confirmed influenza-associated hospitalizations were reported. This is a rate of 25.9 per 100,000 population. The most affected group is those ≥65 years, accounting for more than 50% of reported cases. Among all hospitalizations, 6,295 (87.1%) were associated with influenza A viruses and 874 (12.1%) with influenza B viruses. There was no virus type information for 37 (0.5%) hospitalizations. Among hospitalizations with influenza A subtype information, 1,622 (98.0%) were attributed to H3 and 33 (2.0%) were attributed to 2009 H1N1.

The most commonly reported underlying medical conditions among hospitalized adults were cardiovascular disease, metabolic disorders, obesity, and chronic lung disease (excluding asthma). Among 139 hospitalized women of childbearing age (15-44 years), 32 were pregnant. The most commonly reported underlying medical conditions in hospitalized children were asthma, neurologic disorders, chronic lung disease and immune suppression. Forty-three percent of hospitalized children had no identified underlying medical conditions. Additional FluSurv-NET data can be found at: and


View Interactive Application


View Interactive Application


Outpatient Illness Surveillance:

Nationwide during week 4, 4.2% of patient visits reported through the U.S. Outpatient Influenza-like Illness Surveillance Network (ILINet) were due to influenza-like illness (ILI). This percentage is above the national baseline of 2.2%. Similar to what has been observed in previous seasons, the increase observed in week 52 may be attributed in part to a reduced number of routine health care visits during the end of year holidays. (ILI is defined as fever (temperature of 100°F [37.8°C] or greater) and cough and/or sore throat.) Region specific data is available at


View National and Regional Level Graphs and Data

On a regional level, the percentage of outpatient visits for ILI ranged from 2.4% to 6.7% during week 4. All 10 regions reported a proportion of outpatient visits for ILI above their region-specific baseline levels.


ILINet Activity Indicator Map:

Data collected in ILINet are used to produce a measure of ILI activity* by state. Activity levels are based on the percent of outpatient visits in a state due to ILI and are compared to the average percent of ILI visits that occur during spring and fall weeks with little or no influenza virus circulation. Activity levels range from minimal, which would correspond to ILI activity from outpatient clinics being below the average, to high, which would correspond to ILI activity from outpatient clinics being much higher than average.

During week 4, the following ILI activity levels were experienced:

  • Twenty-four states and New York City experienced high ILI activity (Arizona, Arkansas, California, Colorado, Hawaii, Idaho, Kansas, Louisiana, Michigan, Missouri, Nebraska, Nevada, New Jersey, New Mexico, New York, North Dakota, Oklahoma, Oregon, Texas, Utah, Vermont, Washington, West Virginia, and Wyoming).
  • Thirteen states and the District of Columbia experienced moderate ILI activity (Alabama, Connecticut, Delaware, Illinois, Indiana, Iowa, Maryland, Massachusetts, Minnesota, Mississippi, North Carolina, Pennsylvania, and Virginia).
  • Four states experienced low ILI activity (Kentucky, Ohio, South Dakota, and Wisconsin).
  • Nine states experienced minimal ILI activity (Alaska, Florida, Georgia, Maine, Montana, New Hampshire, Rhode Island, South Carolina, and Tennessee).


Differences in the data presented here by CDC and independently by some state health departments likely represent differing levels of data completeness with data presented by the state likely being the more complete.


Geographic Spread of Influenza as Assessed by State and Territorial Epidemiologists:

The influenza activity reported by state and territorial epidemiologists indicates geographic spread of influenza viruses, but does not measure the severity of influenza activity.

During week 4, the following influenza activity was reported:

  • Widespread influenza activity was reported by 42 states (Alaska, Arizona, Arkansas, California, Colorado, Connecticut, Delaware, Florida, Kentucky, Idaho, Illinois, Indiana, Iowa, Kansas, Louisiana, Maine, Maryland, Massachusetts, Michigan, Minnesota, Missouri, Montana, Nebraska, Nevada, New Hampshire, New Jersey, New Mexico, New York, Ohio, Oklahoma, Oregon, Pennsylvania, Rhode Island, South Dakota, Texas, Utah, Vermont, Virginia, Washington, West Virginia, Wisconsin, and Wyoming).
  • Regional influenza activity was reported by 7 states (Alabama, Georgia, Mississippi, North Carolina, North Dakota, South Carolina, and Tennessee).
  • The District of Columbia and one state (Hawaii) reported local influenza activity.
  • Guam reported sporadic influenza activity.
  • Puerto Rico and the U.S. Virgin Islands did not report.

View Full Screen